3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10469

Details:

PFam ID : PF10469

PFam Domain Description : AKAP7 2'5' RNA ligase-like domain

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 195

Average sequence length: 207.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10469	A9V559_MONBE_248_477	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10469	E0VEV2_PEDHC_154_237	100

Sequence based PCA Plot of the family - PF10469 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=205 Length=8
Motif3 Start=163 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay