3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10458

Details:

PFam ID : PF10458

PFam Domain Description : Valyl tRNA synthetase tRNA binding arm

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 1123

Average sequence length: 65.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10458	D4IWL0_BUTFI_1_34	22.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10458	F0X0E6_9STRA_944_1009	100

Sequence based PCA Plot of the family - PF10458 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=5 Length=17
Motif2 Start=26 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay