3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10457

Details:

PFam ID : PF10457

PFam Domain Description : Cholesterol-capturing domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 54

Average sequence length: 153.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10457	B3RQ33_TRIAD_1_126	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10457	E1FJZ5_LOALO_40_234	100

Sequence based PCA Plot of the family - PF10457 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay