3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10455

Details:

PFam ID : PF10455

PFam Domain Description : Bin/amphiphysin/Rvs domain for vesicular trafficking

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 71

Average sequence length: 264.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10455	E2LMN4_MONPE_1_91	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10455	Q6FKU8_CANGA_29_382	100

Sequence based PCA Plot of the family - PF10455 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=153 Length=8
Motif2 Start=219 Length=8
Motif3 Start=111 Length=8
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay