3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10453

Details:

PFam ID : PF10453

PFam Domain Description : Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 140

Average sequence length: 55.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10453	B2ATS8_PODAN_338_394	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10453	Q233Z0_TETTH_263_323	100

Sequence based PCA Plot of the family - PF10453 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay