3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10452

Details:

PFam ID : PF10452

PFam Domain Description : TORC1 subunit TCO89

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 34

Average sequence length: 224.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10452	C0NS21_AJECG_463_527	77.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10452	A7TEA6_VANPO_42_677	93.9

Sequence based PCA Plot of the family - PF10452 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay