3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10451

Details:

PFam ID : PF10451

PFam Domain Description : Telomere regulation protein Stn1

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 69

Average sequence length: 169.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10451	B6K295_SCHJY_6_160	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10451	B6QC20_PENMQ_43_299	100

Sequence based PCA Plot of the family - PF10451 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay