3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10447

Details:

PFam ID : PF10447

PFam Domain Description : Exosome component EXOSC1/CSL4

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 149

Average sequence length: 80.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10447	B2AE31_PODAN_117_188	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10447	Q75E69_ASHGO_130_233	100

Sequence based PCA Plot of the family - PF10447 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=20 Length=8
Motif3 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay