3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10444

Details:

PFam ID : PF10444

PFam Domain Description : Nbl1 / Borealin N terminal

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 59

Average sequence length: 57.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10444	F0Y2W8_9STRA_35_93	8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10444	D3AY46_POLPA_820_885	98.2

Sequence based PCA Plot of the family - PF10444 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay