3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10442

Details:

PFam ID : PF10442

PFam Domain Description : Uncharacterised Sugar-binding Domain

Number of Sequence in 50% Dataset : 171

Number of Sequence in Full Dataset : 525

Average sequence length: 137.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10442	B6K5B8_SCHJY_1040_1315	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10442	Q0VFF0_XENTR_241_372	100

Sequence based PCA Plot of the family - PF10442 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=194 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay