3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10441

Details:

PFam ID : PF10441

PFam Domain Description : Urb2/Npa2 family

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 105

Average sequence length: 213.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10441	B6K5B8_SCHJY_1040_1315	65.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10441	A5DZ61_LODEL_470_716	100

Sequence based PCA Plot of the family - PF10441 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=8
Motif4 Start=203 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay