3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10439

Details:

PFam ID : PF10439

PFam Domain Description : Bacteriocin class II with double-glycine leader peptide

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 147

Average sequence length: 65.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10439	B0C162_ACAM1_575_645	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10439	A5LIS3_STRPN_1_40	91.7

Sequence based PCA Plot of the family - PF10439 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay