3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10438

Details:

PFam ID : PF10438

PFam Domain Description : Cyclo-malto-dextrinase C-terminal domain

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 97

Average sequence length: 77.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10438	B0C162_ACAM1_575_645	93.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10438	Q0HUK6_SHESR_572_662	100

Sequence based PCA Plot of the family - PF10438 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=27
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay