3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10437

Details:

PFam ID : PF10437

PFam Domain Description : Bacterial lipoate protein ligase C-terminus

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 399

Average sequence length: 84.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10437	D3VD44_XENNA_3_51	69.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10437	B0F470_9EUKA_248_347	100

Sequence based PCA Plot of the family - PF10437 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=29 Length=8
Motif3 Start=1 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay