3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10435

Details:

PFam ID : PF10435

PFam Domain Description : Beta-galactosidase, domain 2

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 118

Average sequence length: 167.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10435	D7C0U2_STRBB_377_562	51.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10435	Q0CQ17_ASPTN_50_104	100

Sequence based PCA Plot of the family - PF10435 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=178 Length=8
Motif2 Start=72 Length=8
Motif3 Start=37 Length=8
Motif4 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay