3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10433

Details:

PFam ID : PF10433

PFam Domain Description : Mono-functional DNA-alkylating methyl methanesulfonate N-term

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 382

Average sequence length: 444.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10433	B6K2T0_SCHJY_78_564	77.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10433	A5DSH7_LODEL_156_777	98.9

Sequence based PCA Plot of the family - PF10433 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=587 Length=8
Motif3 Start=542 Length=8
Motif4 Start=626 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay