3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10431

Details:

PFam ID : PF10431

PFam Domain Description : C-terminal, D2-small domain, of ClpB protein

Number of Sequence in 50% Dataset : 192

Number of Sequence in Full Dataset : 4847

Average sequence length: 81.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10431	C0Y8L2_BURPS_1_54	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10431	C0Y8L2_BURPS_1_54	99.9

Sequence based PCA Plot of the family - PF10431 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=9 Length=8
Motif2 Start=66 Length=8
Motif3 Start=39 Length=8
Motif4 Start=51 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay