3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10430

Details:

PFam ID : PF10430

PFam Domain Description : Tie-2 Ig-like domain 1

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 72.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10430	C5M574_CANTT_3_123	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10430	TIE2_DANRE_24_121	100

Sequence based PCA Plot of the family - PF10430 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay