3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10425

Details:

PFam ID : PF10425

PFam Domain Description : C-terminus of bacterial fibrinogen-binding adhesin

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 80

Average sequence length: 155.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10425	P72534_STRPY_190_359	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10425	Q49RA6_STRAG_383_539	100

Sequence based PCA Plot of the family - PF10425 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay