3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10423

Details:

PFam ID : PF10423

PFam Domain Description : Bacterial AMP nucleoside phosphorylase N-terminus

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 188

Average sequence length: 156.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10423	C2GEY0_9CORY_21_163	38.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10423	E8RPS8_9CAUL_27_198	100

Sequence based PCA Plot of the family - PF10423 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=125 Length=8
Motif2 Start=99 Length=8
Motif3 Start=60 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay