3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10421

Details:

PFam ID : PF10421

PFam Domain Description : 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 106

Average sequence length: 157.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10421	D2HCJ8_AILME_244_380	76.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10421	D2HCJ8_AILME_244_380	100

Sequence based PCA Plot of the family - PF10421 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay