3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10420

Details:

PFam ID : PF10420

PFam Domain Description : Cytokine interleukin-12p40 C-terminus

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 34

Average sequence length: 84.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10420	Q800F2_TAKRU_119_213	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10420	D0QTF8_HIPHI_114_196	100

Sequence based PCA Plot of the family - PF10420 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=30
Motif2 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay