3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10419

Details:

PFam ID : PF10419

PFam Domain Description : TFIIIC subunit

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 90

Average sequence length: 33.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10419	D0NQP3_PHYIT_40_71	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10419	E5SWW3_TRISP_40_74	98.8

Sequence based PCA Plot of the family - PF10419 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay