3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10417

Details:

PFam ID : PF10417

PFam Domain Description : C-terminal domain of 1-Cys peroxiredoxin

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 1271

Average sequence length: 37.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10417	A2DS04_TRIVA_1_40	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10417	E0XR04_9PROT_191_223	100

Sequence based PCA Plot of the family - PF10417 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay