3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10416

Details:

PFam ID : PF10416

PFam Domain Description : Transcription-initiator DNA-binding domain IBD

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 104

Average sequence length: 120.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10416	A2DS04_TRIVA_1_40	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10416	A2DI90_TRIVA_8_150	100

Sequence based PCA Plot of the family - PF10416 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay