3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10413

Details:

PFam ID : PF10413

PFam Domain Description : Amino terminal of the G-protein receptor rhodopsin

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 111

Average sequence length: 31.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10413	E7I3I6_ECOLX_1_111	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10413	Q09UZ9_9NEOB_1_19	100

Sequence based PCA Plot of the family - PF10413 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay