3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10412

Details:

PFam ID : PF10412

PFam Domain Description : Type IV secretion-system coupling protein DNA-binding domain

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 240

Average sequence length: 298.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10412	E7I3I6_ECOLX_1_111	86.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10412	Q3SI88_THIDA_149_568	100

Sequence based PCA Plot of the family - PF10412 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=389 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay