3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10411

Details:

PFam ID : PF10411

PFam Domain Description : Disulfide bond isomerase protein N-terminus

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 368

Average sequence length: 55.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10411	E6MSV8_9BACT_382_425	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10411	B4U868_HYDS0_43_107	100

Sequence based PCA Plot of the family - PF10411 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay