3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10409

Details:

PFam ID : PF10409

PFam Domain Description : C2 domain of PTEN tumour-suppressor protein

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 265

Average sequence length: 139.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10409	D7KGM6_ARALL_30_133	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10409	F0WDD2_9STRA_455_576	99.6

Sequence based PCA Plot of the family - PF10409 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=164 Length=8
Motif3 Start=195 Length=11
Motif4 Start=147 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay