3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10408

Details:

PFam ID : PF10408

PFam Domain Description : Ubiquitin elongating factor core

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 196

Average sequence length: 537.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10408	D7FHG5_ECTSI_150_470	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10408	A7ARZ6_BABBO_278_1016	100

Sequence based PCA Plot of the family - PF10408 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=483 Length=8
Motif2 Start=93 Length=8
Motif3 Start=624 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay