3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10406

Details:

PFam ID : PF10406

PFam Domain Description : Transcription factor TFIID complex subunit 8 C-term

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 107

Average sequence length: 53.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10406	A2EJW3_TRIVA_155_209	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10406	A9UQ40_MONBE_491_541	99.0

Sequence based PCA Plot of the family - PF10406 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=42

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay