3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10401

Details:

PFam ID : PF10401

PFam Domain Description : Interferon-regulatory factor 3

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 125

Average sequence length: 166.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10401	Q5G9V5_TUPBE_1_122	46.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10401	C3ZAX5_BRAFL_220_416	100

Sequence based PCA Plot of the family - PF10401 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=179 Length=8
Motif3 Start=162 Length=8
Motif4 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay