3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10400

Details:

PFam ID : PF10400

PFam Domain Description : Virulence activator alpha C-term

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 298

Average sequence length: 87.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10400	D0HIQ7_VIBMI_1_38	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10400	E1RAF7_SPISS_94_192	100

Sequence based PCA Plot of the family - PF10400 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay