3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10399

Details:

PFam ID : PF10399

PFam Domain Description : Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 276

Average sequence length: 39.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10399	A8TRQ9_9PROT_3_36	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10399	A3WT50_9BRAD_1_25	100

Sequence based PCA Plot of the family - PF10399 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay