3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10397

Details:

PFam ID : PF10397

PFam Domain Description : Adenylosuccinate lyase C-terminus

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 1017

Average sequence length: 81.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10397	E7R122_PICAD_2_756	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10397	PUR8_CAEEL_378_455	100

Sequence based PCA Plot of the family - PF10397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=17
Motif2 Start=65 Length=11
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay