3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10396

Details:

PFam ID : PF10396

PFam Domain Description : GTP-binding protein TrmE N-terminus

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 1175

Average sequence length: 116.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10396	E7R122_PICAD_2_756	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10396	C1N1Y5_MICPC_57_209	100

Sequence based PCA Plot of the family - PF10396 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=49 Length=17
Motif3 Start=131 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay