3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10395

Details:

PFam ID : PF10395

PFam Domain Description : Utp8 family

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 20

Average sequence length: 627.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10395	E7R122_PICAD_2_756	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10395	E7R122_PICAD_2_756	100

Sequence based PCA Plot of the family - PF10395 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=511 Length=8
Motif3 Start=575 Length=8
Motif4 Start=548 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay