3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10394

Details:

PFam ID : PF10394

PFam Domain Description : Histone acetyl transferase HAT1 N-terminus

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 150

Average sequence length: 156.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10394	D8U1J0_VOLCA_104_287	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10394	E3JV21_PUCGT_10_197	100

Sequence based PCA Plot of the family - PF10394 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=35 Length=8
Motif4 Start=180 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay