3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10392

Details:

PFam ID : PF10392

PFam Domain Description : Golgi transport complex subunit 5

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 103

Average sequence length: 124.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10392	E9B3A2_LEIME_5_128	55.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10392	Q5KKM0_CRYNE_10_154	100

Sequence based PCA Plot of the family - PF10392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay