3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10391

Details:

PFam ID : PF10391

PFam Domain Description : Fingers domain of DNA polymerase lambda

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 172

Average sequence length: 51.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10391	D8LNK4_ECTSI_285_349	8.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10391	D8LNK4_ECTSI_285_349	100

Sequence based PCA Plot of the family - PF10391 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=8
Motif2 Start=6 Length=8
Motif3 Start=29 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay