3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10388

Details:

PFam ID : PF10388

PFam Domain Description : EAL-domain associated signalling protein domain

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 77

Average sequence length: 148.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10388	A0L6B8_MAGSM_253_417	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10388	A6CM04_9BACI_239_405	100

Sequence based PCA Plot of the family - PF10388 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=71 Length=11
Motif4 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay