3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10383

Details:

PFam ID : PF10383

PFam Domain Description : Transcription-silencing protein Clr2

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 43

Average sequence length: 129.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10383	Q5KJU7_CRYNE_468_609	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10383	E9DFA5_COCPS_248_384	100

Sequence based PCA Plot of the family - PF10383 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=143 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay