3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10379

Details:

PFam ID : PF10379

PFam Domain Description : Virulence protein nec1

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 4

Average sequence length: 43

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10379	C4Y093_CLAL4_29_80	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10379	E1U2V9_9ACTO_38_75	66

Sequence based PCA Plot of the family - PF10379 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay