3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10377

Details:

PFam ID : PF10377

PFam Domain Description : Autophagy-related protein 11

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 113

Average sequence length: 136.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10377	B4PUW6_DROYA_940_1081	57.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10377	ATG11_KLULA_834_1044	100

Sequence based PCA Plot of the family - PF10377 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay