3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10375

Details:

PFam ID : PF10375

PFam Domain Description : GRIP-related Arf-binding domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 39

Average sequence length: 18.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10375	C4Q1V5_SCHMA_399_529	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10375	Q4P9H3_USTMA_331_349	100

Sequence based PCA Plot of the family - PF10375 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay