3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10374

Details:

PFam ID : PF10374

PFam Domain Description : Telomerase activating protein Est1

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 161

Average sequence length: 122.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10374	C4Q1V5_SCHMA_399_529	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10374	E9F0K0_METAR_75_222	100

Sequence based PCA Plot of the family - PF10374 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=128 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay