3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10373

Details:

PFam ID : PF10373

PFam Domain Description : Est1 DNA/RNA binding domain

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 278

Average sequence length: 251.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10373	C3ZWE2_BRAFL_224_267	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10373	C4Q1V5_SCHMA_535_992	100

Sequence based PCA Plot of the family - PF10373 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=48 Length=8
Motif2 Start=356 Length=11
Motif3 Start=1 Length=8
Motif4 Start=13 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay