3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10371

Details:

PFam ID : PF10371

PFam Domain Description : Domain of unknown function

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 535

Average sequence length: 63.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10371	A5VE51_SPHWW_13_50	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10371	B8BQ74_THAPS_635_699	100

Sequence based PCA Plot of the family - PF10371 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=22 Length=8
Motif3 Start=36 Length=8
Motif4 Start=48 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay