3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10366

Details:

PFam ID : PF10366

PFam Domain Description : Vacuolar sorting protein 39 domain 1

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 126

Average sequence length: 104.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10366	C4Q6N5_SCHMA_500_636	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10366	D0NMS1_PHYIT_531_657	100

Sequence based PCA Plot of the family - PF10366 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=43 Length=8
Motif3 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay