3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10358

Details:

PFam ID : PF10358

PFam Domain Description : N-terminal C2 in EEIG1 and EHBP1 proteins

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 266

Average sequence length: 145.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10358	A2F3X8_TRIVA_5_145	34.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10358	Q00ZW5_OSTTA_21_160	96.9

Sequence based PCA Plot of the family - PF10358 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=1 Length=18
Motif3 Start=97 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay